These Full GAPS stuffed peppers turn eight roasted bell pepper halves into a colorful family dinner. Each pepper holds creamy lime-and-cilantro chicken salad, then gets a layer of natural cheddar that melts and bubbles during the final bake.
The two-part roast matters. The empty peppers soften first, so the chicken filling does not dry out while you wait for a raw pepper to cook. After filling, the second bake only needs to heat the center and melt the cheese.

Why This Dinner Works for a Busy GAPS Kitchen
The filling starts with cooked chicken, which makes this an easy way to use meat left from a batch of GAPS Chicken Meat Stock. In our house, keeping meat stock moving is what makes meals like this possible on a weekday. The chicken is already cooked, and the rest can happen while the peppers take their first turn in the oven.
You can also prepare the chicken salad earlier in the day and keep it covered in the refrigerator. That leaves the pepper cutting, two short bakes, and cleanup for dinner time. With six children, homeschool, and second-shift work all sharing the schedule, that division is useful.
If the chicken is coming from meat stock, pull it from the bones while it is still easy to handle, then chill it before mixing the sour cream. The filling is easier to portion when the chicken is cool and the sour cream stays thick. Measure the spices and grate the cheddar before the peppers enter the oven, and the filling will be ready before the first roast ends.
Where These Peppers Fit on GAPS
This recipe belongs on Full GAPS after cultured sour cream and natural cheese have been introduced. Use homemade 24-hour cultured sour cream, not commercial sour cream. Choose natural aged cheddar without starch, anti-caking powder, coloring, or other additives.
Bell peppers and chipotle are nightshades. If you are avoiding nightshades, use a separate nightshade-free meal instead of changing this formula until it no longer resembles stuffed peppers. This is also not an Introduction Diet recipe because it depends on roasted peppers, spices, cultured sour cream, and cheese.
Ingredients That Shape the Recipe
Bell Peppers
Use four whole peppers, cut lengthwise into eight halves. Red peppers are naturally sweet after roasting. Orange and yellow work just as well. Green peppers have a sharper flavor and roast into something closer to a poblano.
Cooked Chicken
Chop three cups of cooked chicken into bite-size pieces. The pieces should be small enough to mound inside each pepper without falling out, but not mashed into paste. Chicken removed from a fresh meat-stock batch is a practical option.
Cultured Sour Cream and Cheddar
The sour cream binds the chicken and carries the lime, cumin, and chipotle through the filling. The cheddar forms the hot browned top. Both belong only after their place in the Dairy Introduction Structure.
Grate the cheddar from a block instead of using packaged shreds with starch or anti-caking powder. Six ounces gives every pepper a complete layer without burying the chicken salad. Keep the shreds loose until assembly so they spread across the mounded filling rather than landing in one thick clump.
Scallions, Cilantro, Lime and Spices
Thinly slice two scallions and finely chop half a bunch of cilantro. Half the cilantro goes into the filling and the rest finishes the baked peppers. Fresh lime juice keeps the rich dairy from tasting heavy. Pure cumin, chipotle, sea salt, and black pepper provide the Mexican seasoning without a commercial packet.
Roast the Empty Peppers First
Brush the cut interiors with one measured tablespoon of melted ghee, coconut oil, or rendered animal fat. Roast the halves cut-side up at 400°F for about 15 minutes. They are ready when the walls look glossy and slightly relaxed, the edges carry small browned spots, and the peppers still hold their shape.

A little liquid may collect inside the halves. Blot it with a clean linen towel before filling. Leaving that moisture in the cavity can thin the chicken salad and make the pepper watery underneath.
Do not roast until the empty halves collapse. They still need enough structure to hold three ounces of filling and survive another 15 minutes in the oven. If the rims fold inward when you try to blot them, the peppers went too far during the first bake. Fill them gently and shorten the second bake only if the cheese and filling reach their required endpoints sooner.
Mix and Fill the Peppers
Stir the cooked chicken, sour cream, half the cilantro, scallions, lime juice, cumin, sea salt, chipotle, and black pepper together. Stop when every piece is lightly coated. The mixture should hold together on a spoon without looking wet or soupy.
Divide the filling among all eight halves. A heaping scoop is about three ounces, though pepper size will change the exact mound. Cover each mound with grated cheddar before the pan returns to the oven.
Set the smaller pepper halves toward the middle of the dish and the largest near the ends. The filling should sit inside the rim instead of spilling between the peppers. If one half is shallow, give it a little less and distribute the extra among the deeper cavities. Keep the total filling and all eight halves in the same batch.

Know When the Final Bake Is Done
Bake the filled peppers for about 15 minutes. The cheddar should be completely melted with active bubbles around the edges and a few lightly browned spots. Check the center of a pepper with a food thermometer. The chicken filling needs to reach 165°F.
The pepper walls should be tender enough to cut with the side of a fork while still supporting the filling. Garnish with the remaining cilantro after the dish leaves the oven.
Let the dish stand for 5 minutes before lifting the first pepper. The filling settles slightly and is less likely to slide over the softened rim.
If the cheese browns before the filling reaches 165°F, lay a loose sheet of unbleached parchment over the dish and continue heating. If the filling is hot but the cheese still looks pale, move the dish to a higher oven rack for the last minute or two and watch closely. Use the thermometer and the visible cheese cues together instead of extending the bake by guesswork.

GAPS Mexican Chicken Salad Stuffed Peppers with Cheddar
Ingredients
Equipment
Method
- Heat the oven to 400°F. Set out the Le Creuset rectangular dish or stainless sheet pan.
- Cut the bell peppers in half lengthwise. Remove every seed and membrane, then arrange all eight halves cut-side up in the baking dish.
- Brush the cut interiors with the melted ghee, coconut oil, or rendered animal fat.
- Roast for about 15 minutes, until all eight pepper halves look glossy and slightly relaxed, with small browned spots at the edges while still holding their shape.

- While the peppers roast, mix the cooked chicken, sour cream, half the cilantro, scallions, lime juice, cumin, sea salt, chipotle, and black pepper until every piece of chicken is lightly coated and the filling holds together on a spoon.
- Remove the peppers from the oven. Blot any liquid from each cavity with a clean linen towel.
- Divide the chicken salad among all eight pepper halves, using a heaping scoop of about 3 ounces for each cavity.
- Cover every filled pepper with the grated cheddar. The cheese should remain visibly shredded before the final bake.

- Bake for about 15 minutes, until the cheddar is fully melted and bubbling at the edges and the center of the chicken filling reaches 165°F on an instant-read thermometer.
- Garnish with the remaining cilantro and serve hot.
Notes
Tried this recipe?
Let us know how it was!Serving the Stuffed Peppers
Serve two halves per person for a four-person main course, or one half with other dishes. For appetizers, cut each pepper half in half again before the first roast. Fill and bake the sixteen smaller boats by the same cues.
Cucumber slices, radishes, or a crisp green salad keep the plate fresh without adding another heavy component. Lime wedges can be offered at the table for anyone who wants a sharper finish.
For a buffet, keep the peppers in the baking dish so the sides support one another. For individual plates, lift from underneath with a wide stainless spatula. Tongs can squeeze the softened pepper walls and push the warm filling over the rim.
Storage and Reheating
Cool leftovers promptly, cover them, and refrigerate for up to four days. Reheat the peppers in an oven-safe dish at 325°F for about 20 minutes, until the center returns to 165°F. The cheddar will be softer than it was straight from the first bake, but the pepper and filling still hold together well.
Store the halves in a single layer when possible. Stacking presses the filling into the cheese below and makes the softened peppers harder to lift cleanly. For lunch, reheat only the number you need and leave the rest chilled rather than warming and cooling the whole batch repeatedly.
Recommended Equipment
- Le Creuset Heritage 4-quart rectangular dish in Artichaut or a stainless sheet pan
- Large mixing bowl
- Sharp chef’s knife and stable wooden cutting board
- Pastry brush for the melted cooking fat
- Instant-read food thermometer
- Fine grater for the cheddar
Frequently Asked Questions
Can I Use Store-Bought Sour Cream?
Use homemade sour cream cultured for a full 24 hours for this GAPS version. Commercial sour cream is not the same preparation.
Why Not Brush the Peppers With Olive Oil?
Use the measured ghee, coconut oil, or rendered animal fat for roasting. Keep cold-pressed olive oil for raw use.
Can I Make the Filling Ahead?
Yes. Mix the chicken salad earlier, cover it, and refrigerate it. Keep the peppers separate until they finish the first roast and have been blotted dry.
Can I Make These Dairy-Free?
The accepted formula depends on cultured sour cream and cheddar. A dairy-free filling and topping would be a separate recipe rather than a small substitution inside this one.
Why Is the Filling Watery?
The most common cause is liquid left in the peppers after their first roast. Blot every cavity before filling. The chicken should also be cooled and drained of excess stock before it meets the sour cream. If the finished mixture pools liquid at the bottom of the bowl, drain that liquid before dividing the filling.
Can I Use Green Bell Peppers?
Yes. Green peppers are sharper and less sweet than red, orange, or yellow peppers. Roasting softens that edge and gives them a flavor closer to a poblano. You can use all green or mix colors while keeping the count at four whole peppers.
How Many Does This Make?
The recipe makes eight stuffed pepper halves. Serve two halves each for four main-course portions.
Plan the Rest of Full GAPS
First 30 Days on Full GAPS is designed for the meal-planning, batch-cooking, and kitchen-rhythm questions that come after Intro. Find it with the current and upcoming family resources in the WFLI shop.



Leave a comment